snATACseq analysis with ArchR - cluster QC 1.
Remove clusters that do not have >= 30 cells in at least 2 donors
Batch corrected cell counts per cluster
| C1 | C10 | C11 | C12 | C13 | C14 | C15 | C16 | C2 | C3 | C4 | C5 | C6 | C7 | C8 | C9 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1106 | 968 | 814 | 1036 | 417 | 1082 | 848 | 512 | 949 | 445 | 77 | 575 | 2643 | 559 | 638 | 2340 |
Cluster mappings
| RNA | ExN-4 | RG-1 | ExN-2 | ExN-2 | InN-1 | RG-1 | ExN-1 | ExN-2 | ExN-2 | MG | InN-2 | InN-2 | RG-2 | ExN-2 | ExN-5 | ExN-2 |
| ATAC | C1 | C15 | C6 | C9 | C12 | C5 | C8 | C10 | C7 | C4 | C13 | C14 | C16 | C11 | C2 | C3 |
Cell counts
UMAP
Remove clusters that do not have >= 30 cells in at least 2 donors
Cluster mappings
| RNA | ExN-4 | RG-1 | ExN-2 | ExN-1 | InN-1 | RG-2 | ExN-1 | ExN-5 | RG-1 | InN-2 | ExN-5 | InN-2 | RG-1 | ExN-2 | ExN-4 | InN-2 | ExN-2 |
| ATAC | C3 | C16 | C9 | C5 | C12 | C15 | C8 | C1 | C6 | C13 | C2 | C14 | C17 | C10 | C4 | C11 | C7 |
Cell counts
UMAP